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HUNER: improving biomedical NER with pretraining

    https://pubmed.ncbi.nlm.nih.gov/31243432/
    Abstract. Motivation: Several recent studies showed that the application of deep neural networks advanced the state-of-the-art in named entity recognition (NER), …

Biomedical Named Entity Recognition at Scale

    https://link.springer.com/chapter/10.1007/978-3-030-68763-2_48
    Named entity recognition (NER) is a widely applicable natural language processing task and building block of question answering, topic modeling, information …

Comparison of named entity recognition methodologies …

    https://biomedical-engineering-online.biomedcentral.com/articles/10.1186/s12938-018-0573-6
    Biomedical named entity recognition (Bio-NER) is a fundamental task in handling biomedical text terms, such as RNA, protein, cell type, cell line, and DNA. Bio …

Who’s Who and What’s What: Advances in Biomedical …

    https://towardsdatascience.com/whos-who-and-what-s-what-advances-in-biomedical-named-entity-recognition-bioner-c42a3f63334c
    The space of biomedical concepts is enormous, making it unlikely that NER systems will transfer beyond the specific settings for which they were annotated. This …

Biomedical named entity recognition using deep neural …

    https://pubmed.ncbi.nlm.nih.gov/31881938/
    Results: We propose herein an NER system for biomedical entities by incorporating n-grams with bi-directional long short-term memory (BiLSTM) and CRF; this …

d4data/biomedical-ner-all · Hugging Face

    https://huggingface.co/d4data/biomedical-ner-all
    An English Named Entity Recognition model, trained on Maccrobat to recognize the bio-medical entities (107 entities) from a given text corpus (case reports etc.). This model …

Named Entity Recognition (NER) Using BIOBERT

    https://www.pragnakalp.com/named-entity-recognition-ner-using-biobert-demo/
    With the progress in the NLP (Natural Language Processing) and deep learning, we decide to develop the NER system to recognise and classify the Biomedical substances from the text. This BIO-NER system …

Integrating 🤗 Transformers with MedCAT for biomedical …

    https://towardsdatascience.com/integrating-transformers-with-medcat-for-biomedical-ner-l-8869c76762a
    Biomedical NER+L is concerned with extracting concepts from free text found in Electronic Health Records (EHRs) and linking them to large biomedical databases like SNOMED-CT and UMLS. The Medical …

magesh-technovator/bio-medical-clinical-ner - GitHub

    https://github.com/magesh-technovator/bio-medical-clinical-ner
    HunFlair -Bio-medical NER based on flair framework, achieves SOTA (comparison without fine-tuning), Easy framework for biomedical fine-tuning, training and pre-training PubMedBERT -Domain Specific pre …

Custom NER for Extracting Disease Entities - Medium

    https://medium.com/analytics-vidhya/custom-ner-for-extracting-disease-entities-c620aca2e1bb
    Custom NER for Extracting Disease Entities | by sangeetha natarajan | Analytics Vidhya | Medium Write Sign up Sign In 500 Apologies, but something went …



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