Memory-Based Biomedical Named-Entity Tagging

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Improving biomedical named entity recognition with …

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03834-6

BC2GM BC2GM is a dataset used for the BioCreative II gene mention tagging task. 1 It contains 20,000 sentences from abstracts of biomedical publications …

Memory-based biomedical named-entity tagging

https://www.semanticscholar.org/paper/Memory-based-biomedical-named-entity-tagging-Daelemans-Asch/6e49a52a5e80e253a8c092f5eb6b1bc3dcbeec96

MBSP, as an instance of this approach, combines a number of modules, each trained using memory-based learning from linguistically annotated corpora (Daelemans & Van den Bosch, 2005). An MBL system consists of two components: a memorybased learning …

Long short-term memory RNN for biomedical named …

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1868-5

Biomedical named entity recognition (BNER), which recognizes important biomedical entities (e.g. genes and proteins) from text, is a essential step in biomedical …

Memory-based biomedical Named-Entity tagging1

https://www.clips.ua.ac.be/~walter/papers/2010/dvm10.pdf

Bosch, 2005).3 An MBL system consists of two components: a memory-based learning component and a similarity-based performance component. During training, the learning …

Improving Named Entity Recognition for Biomedical and …

https://link.springer.com/chapter/10.1007/978-3-030-51310-8_3

Tanabe and Wilbur used a combination of a statistical and a knowledge-based approach to extract gene and protein named entities from biomedical text [ 20 ]. …

BioNerFlair: biomedical named entity …

https://deepai.org/publication/bionerflair-biomedical-named-entity-recognition-using-flair-embedding-and-sequence-tagger

Results: We introduce BioNerFlair, a method to train models for biomedical named entity recognition using Flair plus GloVe embeddings and Bidirectional LSTM-CRF based sequence …

Performance Enhancement of Gene Mention Tagging by …

https://link.springer.com/chapter/10.1007/978-981-15-5679-1_61

Performance enhancement of biomedical named entity recognition tagging by applying a deep learning based framework is introduced with a combination of …

A hybrid named entity tagger for tagging human …

https://pubmed.ncbi.nlm.nih.gov/25946866/

Abstract The predominant step and pre-requisite in the analysis of scientific literature is the extraction of gene/protein names in biomedical texts. Though many taggers are …

CiteSeerX — Memory-based biomedical Named-Entity …

https://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.377.9307

The annotation of named entities was done by means of a Memory-Based Shallow Parser (MBSP) for biomedical text. The parser was developed in the context of the BioMinT EU …

MT-BioNER: Multi-task Learning for Biomedical …

https://arxiv.org/pdf/2001.08904.pdf

To overcome these challenges, we present a multi-task transformer-based neural architecture for slot tagging and applied it to theBiomedical domain (MT-BioNER). We …

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